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Accession IconSRP022131

Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer

Organism Icon Homo sapiens
Sample Icon 15 Downloadable Samples
Technology Badge IconIllumina Genome Analyzer IIx, Illumina HiSeq 2000

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Description
To understand epigenetic changes in the distal regulatory as well as proximal regions, we performed RNA-seq, MBD-seq, and H3K27ac ChIP-seq on gastric tissues and cell lines. Overall design: mRNA sequencing profiles of normal tissue (n), purified gastric cancer (sc), and cultured gastric cancer cell (dc) were generated by deep sequencing, in five samples from three patients (csc1, csc2, csc3) and two replicates (csc1_sc2, csc1_sc3), using Illumina GAIIx and HiSeq2000.
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15
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