Filters
Technology
Platform
Homo sapiens
4 Downloadable Samples
IlluminaHiSeq2500
Description
Deep sequencing of total RNA isolated from the chromatin fraction of MCF-7 cells. Overall design: Stranded total RNA-seq (rRNA-minus) of chromatin-isolated RNA from estradiol starved and estradiol induced MCF-7 cells.
Publication Title
Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin.
Sample Metadata Fields
No sample metadata fields
View Samples
SRP132201- Homo sapiens
- 1 Downloadable Sample
- Illumina HiSeq 2500
Description
Deep sequencing of total RNA isolated from the nucleoplasmic fraction of MCF-7 cells. Overall design: Stranded total RNA-seq of total nucleoplasmic RNA (ribospecies depleted) from MCF-7 cells.
Publication Title
Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin.
Sample Metadata Fields
Specimen part, Cell line, Subject
View Samples SRP059448- Homo sapiens
- 8 Downloadable Samples
- IlluminaHiSeq2000
Description
Purpose: Examine the effect of the long non-coding RNA PARROT on the transcriptome in HeLa cells. Overall design: Total RNA-seq of RNA from cells treated with the control knock-down (NK) or depleted of ENST00000046668 (PARROT) with two different siRNAs (si1 and si2) for 24h.
Publication Title
The long non-coding RNA PARROT is an upstream regulator of c-Myc and affects proliferation and translation.
Sample Metadata Fields
No sample metadata fields
View Samples