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Arabidopsis thaliana
1 Downloadable Sample
Illumina HiSeq 2000
Description
RNA-SEQ of Arabidopsis thaliana leaf tissues under normal and low CO2
Publication Title
No associated publication
Sample Metadata Fields
Specimen part
View Samples- Arabidopsis thaliana
- 14 Downloadable Samples
Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description
The transcriptional response of Arabidopsis thaliana cell suspensions following treatment with the stress hormone methyl jasmonate (MeJA) was monitored over time 16 hours after subcultivation. Three time points were included: 30 minutes, 2 hours and 6 hours after elicitation with 50µm MeJA or DMSO as a control.
Publication Title
Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells.
Sample Metadata Fields
Compound, Time
View Samples- Mus musculus
- 1 Downloadable Sample
- Illumina HiSeq 2000
Description
Open chromatin is induced locally during the repair of DNA double strand breaks, when a cascade of protein recruitments and modifications is triggered. This "ATM cascade" includes components like the Mrn complex, ATM kinase, phosphorylated histon variant ?H2AX, MDC1, E3 ligases RNF 8 and RNF8, 53BP1, and Rif1. Recent investigations have shown that also the Mad2l2 protein is a downstream effector of the ATM cascade during DNA repair. It was first described as an accessory subunit during translesion DNA repair, and more recently as a key factor inhibiting the resection of DNA 5`ends, thus promoting non-homologous end joining, and repressing homologous recombination.Naive embryonic stem cells (ESCs) have a globally open chromatin. A preliminary study from this laboratory has demonstrated that ESCs require the presence of the Mad2l2 protein for the maintenance of their transcriptional and epigenetic profiles, and thus for the stability of pluripotency (Pirouz et al., Cell Cycle 14, 1596, 2015). The aim of the present study was to correlate Mad2l2 with the ATM cascade and the chromatin status in ESCs.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Arabidopsis thaliana
- 307 Downloadable Samples
- Illumina HiSeq 2000
Description
Time-course analysis of shade responsive genes in Col and 12 mutants.
Publication Title
No associated publication
Sample Metadata Fields
Specimen part, Treatment
View Samples- Arabidopsis thaliana
- 182 Downloadable Samples
- Illumina HiSeq 2000
Description
Time-course data of shade avoidance in NAM parents
Publication Title
No associated publication
Sample Metadata Fields
Specimen part, Treatment
View Samples- Zea mays
- 38 Downloadable Samples
- Illumina HiSeq 2500
Description
Developmental gradient of expanding maize leaf
Publication Title
No associated publication
Sample Metadata Fields
Age, Specimen part
View Samples- Zea mays
- 7 Downloadable Samples
- Illumina HiSeq 3000
Description
In order to study the gene expression of pollen tubes as they grow in silk after pollination, we pollinated maize W22 silks with maize B73 pollen. The recent (2016) advent of the W22 genome assembly and annotation allows us to single out RNA-seq reads originating from the pollen tubes. B73 pollen, W22 silk and B73 seedling controls were sequenced as well.
Publication Title
No associated publication
Sample Metadata Fields
Specimen part
View Samples
SRP067502- Homo sapiens
- 591 Downloadable Samples
- IlluminaHiSeq2000
Description
MicroRNA down-regulation and noise regulation
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Homo sapiens
- 186 Downloadable Samples
- Affymetrix Human Genome U219 Array (hgu219)
Description
Human rhinovirus and influenza virus infections of the upper airway lead to colds and the flu and can trigger exacerbations of lower airway diseases including asthma and chronic obstructive pulmonary disease. Despite modest advances in the diagnosis and treatment of infections by these viruses, novel diagnostic and therapeutic targets are still needed to differentiate between the cold and the flu, since the clinical course of influenza can be severe while that of rhinovirus is usually more mild.
Publication Title
A systems approach to understanding human rhinovirus and influenza virus infection.
Sample Metadata Fields
Time
View Samples- Homo sapiens
- 96 Downloadable Samples
- IlluminaHiSeq1000
Description
K562 single cell RNA-seq study
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples