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accession-icon SRP181726
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

Former studies demonstrated that the cembranoid type diterpenes in tobacco has a good antimicrobial, antitumor and neuroprotective activity. Hepatocellular carcinoma has been the world's second largest malignant tumor in recent years. In this study, we isolated cembranoid type diterpenes from tobancco and detected its antitumor activity on hepatoma cell lines, a-2, 7, 11-cyprotermine-4, 6-diol (a-CBD) was used to investigate its antitumor activity on HepG2 cells in vitro.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP181997
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

Former studies demonstrated that the cembranoid type diterpenes in tobacco has a good antimicrobial, antitumor and neuroprotective activity. Hepatocellular carcinoma has been the world's second largest malignant tumor in recent years. In this study, we isolated cembranoid type diterpenes from tobancco and detected its antitumor activity on hepatoma cell lines, a-2, 7, 11-cyprotermine-4, 6-diol (a-CBD) was used to investigate its antitumor activity on HepG2 cells in vitro.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP181779
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

Former studies demonstrated that the cembranoid type diterpenes in tobacco has a good antimicrobial, antitumor and neuroprotective activity. Hepatocellular carcinoma has been the world's second largest malignant tumor in recent years. In this study, we isolated cembranoid type diterpenes from tobancco and detected its antitumor activity on hepatoma cell lines, a-2, 7, 11-cyprotermine-4, 6-diol (a-CBD) was used to investigate its antitumor activity on HepG2 cells in vitro.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP182014
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

Former studies demonstrated that the cembranoid type diterpenes in tobacco has a good antimicrobial, antitumor and neuroprotective activity. Hepatocellular carcinoma has been the world's second largest malignant tumor in recent years. In this study, we isolated cembranoid type diterpenes from tobancco and detected its antitumor activity on hepatoma cell lines, a-2, 7, 11-cyprotermine-4, 6-diol (a-CBD) was used to investigate its antitumor activity on HepG2 cells in vitro.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP182116
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

Former studies demonstrated that the cembranoid type diterpenes in tobacco has a good antimicrobial, antitumor and neuroprotective activity. Hepatocellular carcinoma has been the world's second largest malignant tumor in recent years. In this study, we isolated cembranoid type diterpenes from tobancco and detected its antitumor activity on hepatoma cell lines, a-2, 7, 11-cyprotermine-4, 6-diol (a-CBD) was used to investigate its antitumor activity on HepG2 cells in vitro.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP182003
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

Former studies demonstrated that the cembranoid type diterpenes in tobacco has a good antimicrobial, antitumor and neuroprotective activity. Hepatocellular carcinoma has been the world's second largest malignant tumor in recent years. In this study, we isolated cembranoid type diterpenes from tobancco and detected its antitumor activity on hepatoma cell lines, a-2, 7, 11-cyprotermine-4, 6-diol (a-CBD) was used to investigate its antitumor activity on HepG2 cells in vitro.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE63186
RNA-DIRECTED DNA METHYLATION 4 modulates cold stress resistance in Arabidopsis through the C-REPEAT-BINDING FACTOR-mediated pathway
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE29882
Global transgenerational gene expression dynamics in two nascent allohexaploid wheat lines analogous in genome constitution to common wheat (Triticum aestivum)
  • organism-icon Triticum turgidum subsp. durum, Triticum carthlicum, Triticum aestivum, Aegilops tauschii
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Wheat Genome Array (wheat)

Description

Alteration in gene expression accompanying initial stages of allopolyploidy is a prominent feature in plants, but its spectrum and model are highly idiosyncratic. We used multi-colour GISH to identify individuals from two nascent allohexaploid wheat lines between Triticum turgidum and Aegilops tauschii, which had a transgenerationally stable chromosomal constitution mimicking that of common wheat. We performed genomewide analysis of gene expression for these plants along with their parental species using the Affymetrix GeneChip Wheat Genome-Array. Comparison with parental species coupled with inclusion of empirical mid-parent values (MPVs) revealed two patterns of alteration in gene expression in the allohexaploid lines: parental dominance expression and nonadditive expression. Genes involved in each altered pattern could be classified into three distinct groups, stochastic, heritable and persistent, based on their transgenerational heritability and inter-line conservation. Whereas both altered patterns of gene expression showed a propensity of inheritance, identity of the involved genes is stochastic, consistent with the involvement of diverse Gene Ontology (GO) terms. Nonetheless, those genes showing nonadditive expression exhibited a significant enrichment for vesicle-function. Our results suggest global alteration in gene expression conditioned by nascent allopolyploidy likely play functional roles in stabilization and establishment of the newly formed plants, and consequential to evolution.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE62887
Expression data from haploid and diploid epiblast stem cells
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Haploid pluripotent stem cells, such as haploid embryonic stem cells (haESCs), facilitate the genetic study of recessive traits. In vitro, fish haESCs maintain haploidy in both undifferentiated and differentiated states, but whether mammalian haESCs can preserve pluripotency in the haploid state has not been tested. Here, we report that mouse haESCs can differentiate in vitro into haploid epiblast stem cells (haEpiSCs), which maintain an intact haploid genome, unlimited self-renewal potential, and durable pluripotency to differentiate into various tissues in vitro and in vivo. Mechanistically, the maintenance of self-renewal potential depends on the Activin/bFGF pathway. We further show that haEpiSCs can differentiate in vitro into haploid progenitor-like cells.

Publication Title

Durable pluripotency and haploidy in epiblast stem cells derived from haploid embryonic stem cells in vitro.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE53580
Expression data from Arabidopsis C3H14/15 overexpressors, c3h14c3h15 double mutant vs wild type
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

In plants, CCCH zinc finger proteins involved in secondary wall formation and anther development are poorly understood. We have functionally identified two homologous genes C3H14 and C3H15 and found that the two genes differentially regulate secondary wall formation and anther development. C3H14 contributes more to secondary wall thickening, whereas, C3H15 is more important for anther development.

Publication Title

Arabidopsis C3H14 and C3H15 have overlapping roles in the regulation of secondary wall thickening and anther development.

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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